GWAS Single-Trait
Browse GWAS locus for single trait within given region. If not specified, the region with the most significant P-value was displayed. The scatter plot region can be easily changed by input a new region and 'SEARCH' or click on a BIN in the navigational Manhattan Plot panel. You could also search the GWAS data through our GWAS Table browser. View More >>>
Navigational Manhattan Plot
This panel shows the most significant P-value (Y-axis) between the selected trait and the genetic variants within 500Kb sliding window of the genome (X-axis). You can navigate to your interested region by zoom and drag. Click on the region will generat a gray vertical indicator, and draw 'Detailed Scatter Plot' of this region below.
Detailed Scatter Plot
This panel shows the detailed plot of the variants and the genes within a certain region. Currently, only variants with -Log10(P-value) greater than 5 were displayed. The dots were colored by LD r2 value with the 'ref-variant' ( If not specified, the variant with the most significant P-value was set as the default ref-variant. ). The gene information tooltip provides interfaces for connecting with the gene detailed information, genome browser and eQTL signals. Please notice that the min and max plot regions of the scatter plot are 20 Kb and 1 Mb, respectively. If your input region was smaller than 20 Kb (or larger than 1Mb), the flanking 20 Kb (or 1 Mb) of the middle position was plotted.
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